B.F. Francis Ouellette

faculty_img Academic Title: Associate Professor

Campus: St. George

CSB Appointment: Full Appointment

Primary Undergraduate Department:
Cell and Systems Biology

Graduate Programs:
Cell and Systems Biology

Titles and Honors:

Academic or Administrative Appointments:

Education:
MSc, University of Calgary, 1984 Bsc, McGill University, 1981

 

Mailing Address
 

 

Contact Information
Office phone:
Office:
Lab:
Lab phone:
Email: francis.ouellette@utoronto.ca
Twitter: @bffo
URL: https://twitter.com/bffo

 

Research Areas
Bioinformatics & Computational Biology

 

Publications

 

 

2018

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ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins. Krassowski M, Paczkowska M, Cullion K, Huang T, Dzneladze I, Ouellette BFF, Yamada JT, Fradet-Turcotte A, Reimand J. Nucleic Acids Res. 2018 Jan 4;46(D1):D901-D910. doi: 10.1093/nar/gkx973.
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Analysis of five years of controlled access and data sharing compliance at the International Cancer Genome Consortium. ICGC Data Access Compliance Office; ICGC International Data Access Committee. Nat Genet. 2016 Mar;48(3):224-5. doi: 10.1038/ng.3499.
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Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types PCAWG Transcriptome Core Group; Claudia Calabrese, Natalie R. Davidson, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban; Deniz Demircioğlu, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Linda Xiang, Fan Zhang , Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang PanHammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina Yung, Shida Zhu, PCAWG Transcriptome Working Group, Philip Awadalla, Chad J. Creighton, Matthew Meyerson, B.F. Francis Ouellette, Kui Wu, Huangming Yang, ICGC/TCGA PanCancer Analysis of Whole Genomes Network, Alvis Brazma, Angela N. Brooks, Jonathan Göke, Gunnar Rätsch, Roland F. Schwarz, Oliver Stegle, Zemin Zhang. Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types
biorxiv
Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments Christina K. Yung, Brian D. O’Connor, Sergei Yakneen, Junjun Zhang, Kyle Ellrott, Kortine Kleinheinz, Naoki Miyoshi, Keiran M. Raine, Romina Royo, Gordon B. Saksena, Matthias Schlesner, Solomon I. Shorser, Miguel Vazquez, Joachim Weischenfeldt, Denis Yuen, Adam P. Butler, Brandi N. Davis-Dusenbery, Roland Eils, Vincent Ferretti, Robert L. Grossman, Olivier Harismendy, Youngwook Kim, Hidewaki Nakagawa, Steven J. Newhouse, David Torrents, Lincoln D. Stein on behalf of the PCAWG Technical Working Group and the PCAWG Network. Large Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments.
biorxiv
Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers. Brazas MD, Ouellette BF. PLoS Comput Biol. 2016 Jun 9;12(6):e1004916. doi: 10.1371/journal.pcbi.1004916. eCollection 2016 Jun.
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Pathway and network analysis of cancer genomes. Creixell P, Reimand J, Haider S, Wu G, Shibata T, Vazquez M, Mustonen V, Gonzalez-Perez A, Pearson J, Sander C, Raphael BJ, Marks DS, Ouellette BFF, Valencia A, Bader GD, Boutros PC, Stuart JM1, Linding R, Lopez-Bigas N, Stein LD; Mutation Consequences and Pathway Analysis Working Group of the International Cancer Genome Consortium. Nat Methods. 2015 Jul;12(7):615-621. doi: 10.1038/nmeth.3440.
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GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training. Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW; GOBLET Consortium. Nat. Biotechnol. 2014 Jun;32(6):519-23
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A quick guide for building a successful bioinformatics community. Budd A, Corpas M, Brazas MD, Fuller JC, Goecks J, Mulder NJ, Michaut M, Ouellette BF, Pawlik A, Blomberg N. PLoS Comput Biol. 2015 Feb 5;11(2):e1003972. doi: 10.1371/journal.pcbi.1003972. eCollection 2015 Feb.
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The International Cancer Genome Consortium’s evolving data-protection policies.Milius D, Dove ES, Chalmers D, Dyke SO, Kato K, Nicolás P, Ouellette BF, Ozenberger B, Rodriguez LL, Zeps N, Joly Y. Nat. Biotechnol. 2014 Jun;32(6):519-23
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2013

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Education in computational biology today and tomorrow.Fox JA, Ouellette BF. PLoS Comput. Biol. 2013 Dec;9(12):e1003391
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Computational approaches to identify functional genetic variants in cancer genomes.Gonzalez-Perez A, Mustonen V, Reva B, Ritchie GR, Creixell P, Karchin R, Vazquez M, Fink JL, Kassahn KS, Pearson JV, Bader GD, Boutros PC, Muthuswamy L, Ouellette BF, Reimand J, Linding R, Shibata T, Valencia A, Butler A, Dronov S, Flicek P, Shannon NB, Carter H, Ding L, Sander C, Stuart JM, Stein LD, Lopez-Bigas N, . Nat. Methods 2013 Aug;10(8):723-9
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Compensating for literature annotation bias when predicting novel drug-disease relationships through Medical Subject Heading Over-representation Profile (MeSHOP) similarity.Cheung WA, Ouellette BF, Wasserman WW. BMC Med Genomics 2013;6 Suppl 2:S3
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Navigating the changing learning landscape: perspective from bioinformatics.ca.Brazas MD, Ouellette BF. Brief. Bioinformatics 2013 Sep;14(5):556-62
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2012

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Inferring novel gene-disease associations using Medical Subject Heading Over-representation Profiles.Cheung WA, Ouellette BF, Wasserman WW. Genome Med 2012;4(9):75
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Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs).Cheung WA, Ouellette BF, Wasserman WW. BMC Bioinformatics 2012;13:249
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A decade of Web Server updates at the Bioinformatics Links Directory: 2003-2012.Brazas MD, Yim D, Yeung W, Ouellette BF. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W3-W12
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2011

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The 2011 Bioinformatics Links Directory update: more resources, tools and databases and features to empower the bioinformatics community.Brazas MD, Yim DS, Yamada JT, Ouellette BF. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W3-7
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CAERUS: predicting CAncER oUtcomeS using relationship between protein structural information, protein networks, gene expression data, and mutation data.Zhang KX, Ouellette BF. PLoS Comput. Biol. 2011 Mar;7(3):e1001114
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Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.D’Souza CA, Kronstad JW, Taylor G, Warren R, Yuen M, Hu G, Jung WH, Sham A, Kidd SE, Tangen K, Lee N, Zeilmaker T, Sawkins J, McVicker G, Shah S, Gnerre S, Griggs A, Zeng Q, Bartlett K, Li W, Wang X, Heitman J, Stajich JE, Fraser JA, Meyer W, Carter D, Schein J, Krzywinski M, Kwon-Chung KJ, Varma A, Wang J, Brunham R, Fyfe M, Ouellette BF, Siddiqui A, Marra M, Jones S, Holt R, Birren BW, Galagan JE, Cuomo CA. MBio 2011;2(1):e00342-10
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Towards BioDBcore: a community-defined information specification for biological databases.Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Karsch Mizrachi I, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C, . Database (Oxford) 2011;2011:baq027
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Towards BioDBcore: a community-defined information specification for biological databases.Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C, . Nucleic Acids Res. 2011 Jan;39(Database issue):D7-10
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2010

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Quantum dot conjugates for targeted silencing of bcr/abl gene by RNA interference in human myelogenous leukemia K562 cells.Zhao Y, Zhao L, Zhou L, Zhi Y, Xu J, Wei Z, Zhang KX, Ouellette BF, Shen H. J Nanosci Nanotechnol 2010 Aug;10(8):5137-43
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Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory.Brazas MD, Yamada JT, Ouellette BF. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W3-6
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International network of cancer genome projects. , Hudson TJ, Anderson W, Artez A, Barker AD, Bell C, Bernabé RR, Bhan MK, Calvo F, Eerola I, Gerhard DS, Guttmacher A, Guyer M, Hemsley FM, Jennings JL, Kerr D, Klatt P, Kolar P, Kusada J, Lane DP, Laplace F, Youyong L, Nettekoven G, Ozenberger B, Peterson J, Rao TS, Remacle J, Schafer AJ, Shibata T, Stratton MR, Vockley JG, Watanabe K, Yang H, Yuen MM, Knoppers BM, Bobrow M, Cambon-Thomsen A, Dressler LG, Dyke SO, Joly Y, Kato K, Kennedy KL, Nicolás P, Parker MJ, Rial-Sebbag E, Romeo-Casabona CM, Shaw KM, Wallace S, Wiesner GL, Zeps N, Lichter P, Biankin AV, Chabannon C, Chin L, Clément B, de Alava E, Degos F, Ferguson ML, Geary P, Hayes DN, Hudson TJ, Johns AL, Kasprzyk A, Nakagawa H, Penny R, Piris MA, Sarin R, Scarpa A, Shibata T, van de Vijver M, Futreal PA, Aburatani H, Bayés M, Botwell DD, Campbell PJ, Estivill X, Gerhard DS, Grimmond SM, Gut I, Hirst M, López-Otín C, Majumder P, Marra M, McPherson JD, Nakagawa H, Ning Z, Puente XS, Ruan Y, Shibata T, Stratton MR, Stunnenberg HG, Swerdlow H, Velculescu VE, Wilson RK, Xue HH, Yang L, Spellman PT, Bader GD, Boutros PC, Campbell PJ, Flicek P, Getz G, Guigó R, Guo G, Haussler D, Heath S, Hubbard TJ, Jiang T, Jones SM, Li Q, López-Bigas N, Luo R, Muthuswamy L, Ouellette BF, Pearson JV, Puente XS, Quesada V, Raphael BJ, Sander C, Shibata T, Speed TP, Stein LD, Stuart JM, Teague JW, Totoki Y, Tsunoda T, Valencia A, Wheeler DA, Wu H, Zhao S, Zhou G, Stein LD, Guigó R, Hubbard TJ, Joly Y, Jones SM, Kasprzyk A, Lathrop M, López-Bigas N, Ouellette BF, Spellman PT, Teague JW, Thomas G, Valencia A, Yoshida T, Kennedy KL, Axton M, Dyke SO, Futreal PA, Gerhard DS, Gunter C, Guyer M, Hudson TJ, McPherson JD, Miller LJ, Ozenberger B, Shaw KM, Kasprzyk A, Stein LD, Zhang J, Haider SA, Wang J, Yung CK, Cros A, Cross A, Liang Y, Gnaneshan S, Guberman J, Hsu J, Bobrow M, Chalmers DR, Hasel KW, Joly Y, Kaan TS, Kennedy KL, Knoppers BM, Lowrance WW, Masui T, Nicolás P, Rial-Sebbag E, Rodriguez LL, Vergely C, Yoshida T, Grimmond SM, Biankin AV, Bowtell DD, Cloonan N, deFazio A, Eshleman JR, Etemadmoghadam D, Gardiner BB, Gardiner BA, Kench JG, Scarpa A, Sutherland RL, Tempero MA, Waddell NJ, Wilson PJ, McPherson JD, Gallinger S, Tsao MS, Shaw PA, Petersen GM, Mukhopadhyay D, Chin L, DePinho RA, Thayer S, Muthuswamy L, Shazand K, Beck T, Sam M, Timms L, Ballin V, Lu Y, Ji J, Zhang X, Chen F, Hu X, Zhou G, Yang Q, Tian G, Zhang L, Xing X, Li X, Zhu Z, Yu Y, Yu J, Yang H, Lathrop M, Tost J, Brennan P, Holcatova I, Zaridze D, Brazma A, Egevard L, Prokhortchouk E, Banks RE, Uhlén M, Cambon-Thomsen A, Viksna J, Ponten F, Skryabin K, Stratton MR, Futreal PA, Birney E, Borg A, Børresen-Dale AL, Caldas C, Foekens JA, Martin S, Reis-Filho JS, Richardson AL, Sotiriou C, Stunnenberg HG, Thoms G, van de Vijver M, van’t Veer L, Calvo F, Birnbaum D, Blanche H, Boucher P, Boyault S, Chabannon C, Gut I, Masson-Jacquemier JD, Lathrop M, Pauporté I, Pivot X, Vincent-Salomon A, Tabone E, Theillet C, Thomas G, Tost J, Treilleux I, Calvo F, Bioulac-Sage P, Clément B, Decaens T, Degos F, Franco D, Gut I, Gut M, Heath S, Lathrop M, Samuel D, Thomas G, Zucman-Rossi J, Lichter P, Eils R, Brors B, Korbel JO, Korshunov A, Landgraf P, Lehrach H, Pfister S, Radlwimmer B, Reifenberger G, Taylor MD, von Kalle C, Majumder PP, Sarin R, Rao TS, Bhan MK, Scarpa A, Pederzoli P, Lawlor RA, Delledonne M, Bardelli A, Biankin AV, Grimmond SM, Gress T, Klimstra D, Zamboni G, Shibata T, Nakamura Y, Nakagawa H, Kusada J, Tsunoda T, Miyano S, Aburatani H, Kato K, Fujimoto A, Yoshida T, Campo E, López-Otín C, Estivill X, Guigó R, de Sanjosé S, Piris MA, Montserrat E, González-Díaz M, Puente XS, Jares P, Valencia A, Himmelbauer H, Himmelbaue H, Quesada V, Bea S, Stratton MR, Futreal PA, Campbell PJ, Vincent-Salomon A, Richardson AL, Reis-Filho JS, van de Vijver M, Thomas G, Masson-Jacquemier JD, Aparicio S, Borg A, Børresen-Dale AL, Caldas C, Foekens JA, Stunnenberg HG, van’t Veer L, Easton DF, Spellman PT, Martin S, Barker AD, Chin L, Collins FS, Compton CC, Ferguson ML, Gerhard DS, Getz G, Gunter C, Guttmacher A, Guyer M, Hayes DN, Lander ES, Ozenberger B, Penny R, Peterson J, Sander C, Shaw KM, Speed TP, Spellman PT, Vockley JG, Wheeler DA, Wilson RK, Hudson TJ, Chin L, Knoppers BM, Lander ES, Lichter P, Stein LD, Stratton MR, Anderson W, Barker AD, Bell C, Bobrow M, Burke W, Collins FS, Compton CC, DePinho RA, Easton DF, Futreal PA, Gerhard DS, Green AR, Guyer M, Hamilton SR, Hubbard TJ, Kallioniemi OP, Kennedy KL, Ley TJ, Liu ET, Lu Y, Majumder P, Marra M, Ozenberger B, Peterson J, Schafer AJ, Spellman PT, Stunnenberg HG, Wainwright BJ, Wilson RK, Yang H. Nature 2010 Apr;464(7291):993-8
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Pandora, a pathway and network discovery approach based on common biological evidence.Zhang KX, Ouellette BF. Bioinformatics 2010 Feb;26(4):529-35
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2009

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Prepublication data sharing. , Birney E, Hudson TJ, Green ED, Gunter C, Eddy S, Rogers J, Harris JR, Ehrlich SD, Apweiler R, Austin CP, Berglund L, Bobrow M, Bountra C, Brookes AJ, Cambon-Thomsen A, Carter NP, Chisholm RL, Contreras JL, Cooke RM, Crosby WL, Dewar K, Durbin R, Dyke SO, Ecker JR, El Emam K, Feuk L, Gabriel SB, Gallacher J, Gelbart WM, Granell A, Guarner F, Hubbard T, Jackson SA, Jennings JL, Joly Y, Jones SM, Kaye J, Kennedy KL, Knoppers BM, Kyrpides NC, Lowrance WW, Luo J, MacKay JJ, Martín-Rivera L, McCombie WR, McPherson JD, Miller L, Miller W, Moerman D, Mooser V, Morton CC, Ostell JM, Ouellette BF, Parkhill J, Raina PS, Rawlings C, Scherer SE, Scherer SW, Schofield PN, Sensen CW, Stodden VC, Sussman MR, Tanaka T, Thornton J, Tsunoda T, Valle D, Vuorio EI, Walker NM, Wallace S, Weinstock G, Whitman WB, Worley KC, Wu C, Wu J, Yu J. Nature 2009 Sep;461(7261):168-70
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Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.Brazas MD, Yamada JT, Ouellette BF. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W3-5
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GAIA: a gram-based interaction analysis tool–an approach for identifying interacting domains in yeast.Zhang KX, Ouellette BF. BMC Bioinformatics 2009;10 Suppl 1:S60
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2008

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Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.Rogic S, Montpetit B, Hoos HH, Mackworth AK, Ouellette BF, Hieter P. BMC Genomics 2008;9:355
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Keeping pace with the data: 2008 update on the Bioinformatics Links Directory.Brazas MD, Fox JA, Brown T, McMillan S, Ouellette BF. Nucleic Acids Res. 2008 Jul;36(Web Server issue):W2-4
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2007

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Conducting research on the web: 2007 update for the bioinformatics links directory.Fox JA, McMillan S, Ouellette BF. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W3-5
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CAG-encoded polyglutamine length polymorphism in the human genome.Butland SL, Devon RS, Huang Y, Mead CL, Meynert AM, Neal SJ, Lee SS, Wilkinson A, Yang GS, Yuen MM, Hayden MR, Holt RA, Leavitt BR, Ouellette BF. BMC Genomics 2007;8:126
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2006

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Familial frontotemporal dementia with neuronal intranuclear inclusions is not a polyglutamine expansion disease.Mackenzie IR, Butland SL, Devon RS, Dwosh E, Feldman H, Lindholm C, Neal SJ, Ouellette BF, Leavitt BR. BMC Neurol 2006;6:32
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A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.Fox JA, McMillan S, Ouellette BF. Nucleic Acids Res. 2006 Jul;34(Web Server issue):W3-5
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2005

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Ulysses – an application for the projection of molecular interactions across species.Kemmer D, Huang Y, Shah SP, Lim J, Brumm J, Yuen MM, Ling J, Xu T, Wasserman WW, Ouellette BF. Genome Biol. 2005;6(12):R106
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The Bioinformatics Links Directory: a compilation of molecular biology web servers.Fox JA, Butland SL, McMillan S, Campbell G, Ouellette BF. Nucleic Acids Res. 2005 Jul;33(Web Server issue):W3-24
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Satellog: a database for the identification and prioritization of satellite repeats in disease association studies.Missirlis PI, Mead CL, Butland SL, Ouellette BF, Devon RS, Leavitt BR, Holt RA. BMC Bioinformatics 2005;6:145
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Phylogeny of Na+/Ca2+ exchanger (NCX) genes from genomic data identifies new gene duplications and a new family member in fish species.Marshall CR, Fox JA, Butland SL, Ouellette BF, Brinkman FS, Tibbits GF. Physiol. Genomics 2005 Apr;21(2):161-73
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Atlas – a data warehouse for integrative bioinformatics.Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF. BMC Bioinformatics 2005;6:34
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The Biomolecular Interaction Network Database and related tools 2005 update.Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, Buzadzija K, Cavero R, D’Abreo C, Donaldson I, Dorairajoo D, Dumontier MJ, Dumontier MR, Earles V, Farrall R, Feldman H, Garderman E, Gong Y, Gonzaga R, Grytsan V, Gryz E, Gu V, Haldorsen E, Halupa A, Haw R, Hrvojic A, Hurrell L, Isserlin R, Jack F, Juma F, Khan A, Kon T, Konopinsky S, Le V, Lee E, Ling S, Magidin M, Moniakis J, Montojo J, Moore S, Muskat B, Ng I, Paraiso JP, Parker B, Pintilie G, Pirone R, Salama JJ, Sgro S, Shan T, Shu Y, Siew J, Skinner D, Snyder K, Stasiuk R, Strumpf D, Tuekam B, Tao S, Wang Z, White M, Willis R, Wolting C, Wong S, Wrong A, Xin C, Yao R, Yates B, Zhang S, Zheng K, Pawson T, Ouellette BF, Hogue CW. Nucleic Acids Res. 2005 Jan;33(Database issue):D418-24
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2004

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Pegasys: software for executing and integrating analyses of biological sequences.Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF. BMC Bioinformatics 2004 Apr;5:40
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2003

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GeneComber: combining outputs of gene prediction programs for improved results.Shah SP, McVicker GP, Mackworth AK, Rogic S, Ouellette BF. Bioinformatics 2003 Jul;19(10):1296-7
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2002

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Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast.Brinkman FS, Blanchard JL, Cherkasov A, Av-Gay Y, Brunham RC, Fernandez RC, Finlay BB, Otto SP, Ouellette BF, Keeling PJ, Rose AM, Hancock RE, Jones SJ, Greberg H. Genome Res. 2002 Aug;12(8):1159-67
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Improving gene recognition accuracy by combining predictions from two gene-finding programs.Rogic S, Ouellette BF, Mackworth AK. Bioinformatics 2002 Aug;18(8):1034-45
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2001

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Internet basics.Baxevanis AD, Ouellette BF. Curr Protoc Protein Sci 2001 May;Chapter 2:Unit2.4
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Sequence databases: integrated information retrieval and data submission.Weisemann JM, Boguski MS, Ouellette BF. Curr Protoc Hum Genet 2001 May;Chapter 6:Unit 6.7
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Internet basics for biologists.Baxevanis AD, Ouellette BF. Curr Protoc Hum Genet 2001 May;Appendix 3:Appendix 3J
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Sequence databases: integrated information retrieval and data submission.Weisemann JM, Boguski MS, Ouellette BF. Curr Protoc Mol Biol 2001 May;Chapter 19:Unit 19.2
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Internet basics for biologists.Baxevanis AD, Ouellette BF. Curr Protoc Mol Biol 2001 May;Chapter 19:Unit 19.1
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Internet basics for biologists.Baxevanis AD, Ouellette BF. Curr Protoc Cell Biol 2001 May;Appendix 1:Appendix 1H
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Submitting DNA sequences to the databases.Kans JA, Ouellette BF. Methods Biochem Anal 2001;43:65-81
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The GenBank sequence database.Karsch-Mizrachi I, Ouellette BF. Methods Biochem Anal 2001;43:45-63
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BIND–The Biomolecular Interaction Network Database.Bader GD, Donaldson I, Wolting C, Ouellette BF, Pawson T, Hogue CW. Nucleic Acids Res. 2001 Jan;29(1):242-5
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1999

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Mutations in the ABC1 gene in familial HDL deficiency with defective cholesterol efflux.Marcil M, Brooks-Wilson A, Clee SM, Roomp K, Zhang LH, Yu L, Collins JA, van Dam M, Molhuizen HO, Loubster O, Ouellette BF, Sensen CW, Fichter K, Mott S, Denis M, Boucher B, Pimstone S, Genest J, Kastelein JJ, Hayden MR. Lancet 1999 Oct;354(9187):1341-6
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GenBank.Benson DA, Boguski MS, Lipman DJ, Ostell J, Ouellette BF, Rapp BA, Wheeler DL. Nucleic Acids Res. 1999 Jan;27(1):12-7
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1998

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Submitting DNA sequences to the databases.Kans JA, Ouellette BF. Methods Biochem Anal 1998;39:319-53
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The GenBank sequence database.Ouellette BF. Methods Biochem Anal 1998;39:16-45
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GenBank.Benson DA, Boguski MS, Lipman DJ, Ostell J, Ouellette BF. Nucleic Acids Res. 1998 Jan;26(1):1-7
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1997

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Database divisions and homology search files: a guide for the perplexed.Ouellette BF, Boguski MS. Genome Res. 1997 Oct;7(10):952-5
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1996

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Web alert. Protein engineering.Baxevanis AD, Makalowski W, Ouellette BF, Récipon H. Curr. Opin. Biotechnol. 1996 Aug;7(4):462
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Environmental biotechnology.Baxevanis AD, Makalowski W, Ouellette BF, Recipon H. Curr. Opin. Biotechnol. 1996 Jun;7(3):356
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Regulatory affairs.Baxevanis AD, Makalowski W, Ouellette BF, Recipon H. Curr. Opin. Biotechnol. 1996 Jun;7(3):356
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Analytical biotechnology.Baxevanis AD, Makalowski W, Ouellette BF, Récipon H. Curr. Opin. Biotechnol. 1996 Feb;7(1):102
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The biologist and the World Wide Web.Baxevanis AD, Makalowski W, Ouellette BF, Recipon H. Curr. Opin. Biotechnol. 1996 Feb;7(1):99-101
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1995

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The nucleotide sequence of chromosome I from Saccharomyces cerevisiae.Bussey H, Kaback DB, Zhong W, Vo DT, Clark MW, Fortin N, Hall J, Ouellette BF, Keng T, Barton AB. Proc. Natl. Acad. Sci. U.S.A. 1995 Apr;92(9):3809-13
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1994

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LTE1 of Saccharomyces cerevisiae is a 1435 codon open reading frame that has sequence similarities to guanine nucleotide releasing factors.Keng T, Clark MW, Storms RK, Fortin N, Zhong W, Ouellette BF, Barton AB, Kaback DB, Bussey H. Yeast 1994 Jul;10(7):953-8
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Sequencing of chromosome I of Saccharomyces cerevisiae: analysis of the 42 kbp SPO7-CENI-CDC15 region.Clark MW, Keng T, Storms RK, Zhong W, Fortin N, Zeng B, Delaney S, Ouellette BF, Barton AB, Kaback DB. Yeast 1994 Apr;10(4):535-41
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1993

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Physical localization of yeast CYS3, a gene whose product resembles the rat gamma-cystathionase and Escherichia coli cystathionine gamma-synthase enzymes.Barton AB, Kaback DB, Clark MW, Keng T, Ouellette BF, Storms RK, Zeng B, Zhong W, Fortin N, Delaney S. Yeast 1993 Apr;9(4):363-9
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Sequencing of chromosome I from Saccharomyces cerevisiae: analysis of a 32 kb region between the LTE1 and SPO7 genes.Ouellette BF, Clark MW, Keng T, Storms RK, Zhong W, Zeng B, Fortin N, Delaney S, Barton A, Kaback DB. Genome 1993 Feb;36(1):32-42
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The YAL017 gene on the left arm of chromosome I of Saccharomyces cerevisiae encodes a putative serine/threonine protein kinase.Clark MW, Zhong WW, Keng T, Storms RK, Ouellette BF, Barton A, Kaback DB, Bussey H. Yeast 1993 May;9(5):543-9
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1988

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cDNA sequence and homologies of the “57-kDa” nucleotide-binding subunit of the vacuolar ATPase from Arabidopsis.Manolson MF, Ouellette BF, Filion M, Poole RJ. J. Biol. Chem. 1988 Dec;263(34):17987-94
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1986

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β-Mannoside mannohydrolase and the mobilization of the endosperm cell wall of lettuce seeds, cv. Grand Rapids.Ouellette BF, Bewley JD. Planta 1986 Nov;169(3):333-8
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