Dinesh Christendat
Professor
Campus
St. George (downtown)
CSB Appointment
Full
Research Areas
Bioinformatics / Computational Biology, Metabolomics, Microbiology, Molecular Biology, Plant Biology, Structural Biology
Education
Ph.D. Concordia University
Primary Undergraduate Department
Cell & Systems Biology
Graduate Programs
Cell & Systems Biology
Academic or Administrative Appointments
Associate Chair for Undergraduate Studies
Research Description
Plants produce a tremendous variety of aromatic compounds compared to other living organisms. Most of these compounds, referred to as central metabolites, are synthesized from a product of the shikimate pathway. Central metabolites are important for the structural integrity of plants and their protection from invading organisms. Other central metabolites include flavonoids and isoflavonoids, which are potential antioxidants with important nutritional benefits to humans. The regulation of the shikimate pathway is highly coordinated with the biosynthesis of these metabolites in plants. Some questions being addressed in our lab are: What are some of the biological cues that are involved in the regulation of the pathway? How can we take advantage of these regulatory processes to stimulate the shikimate pathway to enhance the biosynthesis of certain classes of central metabolites, especially those that are of nutritional importance?
The shikimate pathway is also an attractive target for drug development because it is absent in humans, but is essential for the survival of microbes, fungi and likely apicomplexan parasites. These parasites include, Plasmodium falciparum, associated with the deadliest form of malaria, and Toxoplasma gondii, implicated in psychological disorders and toxoplasmosis. We are actively studying compounds that are potential inhibitors of enzymes of the shikimate pathway with the aim of developing novel drug compounds. As a protein biochemistry group, we utilize biochemical and biophysical approaches, such as recombinant protein production, protein modification, enzyme kinetics, protein crystallography, protein ligand screening, structural biology, proteomics, etc. to understand how proteins function and how we can modulate their activity.
Contact Information
Office Phone: 416-946-8373
Office: ESC4052
Lab: ESC4045
Lab Phone: 416-946-8436
Email
Mailing Address
Department of Cell & Systems Biology
University of Toronto
25 Willcocks St.
Toronto, ON M5S 3B2
Canada
Recent News
May 18, 2023
CSB Researchers earn multiple NSERC awards
Congratulations to Professors in CSB who earned NSERC Discovery and NSERC-RTI grants! NSERC Discovery Grants The Discovery Grant program supports…
April 25, 2023
Oustanding CSB educators earn 2022-23 TA Teaching Awards
Congratulations to the recipients of the 2022-23 CSB TA Teaching Excellence Award! This award recognizes the significant role of Teaching Assistants…
December 20, 2022
Congratulations to CSB’s Graduate Student Award Recipients!
Congratulations to our Graduate Students who earned recognition for their accomplishments at our Graduate Student Awards on December 19th, 2022!…
Publications
2021
Elevated tyrosine results in the cytosolic retention of 3‐deoxy‐ d ‐arabino‐heptulosonate 7‐phosphate synthase in Arabidopsis thaliana
Kanaris M, Poulin J, Shahinas D, Johnson D, Crowley VM, Fucile G, Provart N, Christendat D
2021, The Plant Journal, 10.1111/tpj.15590
2018
Structural and biochemical approaches uncover multiple evolutionary trajectories of plant quinate dehydrogenases.
Gritsunov A, Peek J, Diaz Caballero J, Guttman D, Christendat D
2018, The Plant journal : for cell and molecular biology, 29890023
Shikimate Induced Transcriptional Activation of Protocatechuate Biosynthesis Genes by QuiR, a LysR-Type Transcriptional Regulator, in Listeria monocytogenes.
Prezioso SM, Xue K, Leung N, Gray-Owen SD, Christendat D
2018, Journal of molecular biology, 430, 1265-1283, 29530613
2016
Structurally diverse dehydroshikimate dehydratase variants participate in microbial quinate catabolism.
Peek J, Roman J, Moran GR, Christendat D
2017, Molecular microbiology, 103, 39-54, 27706847
2014
Identification of Novel Polyphenolic Inhibitors of Shikimate Dehydrogenase (AroE)
Peek J, Shi T, Christendat D
2014, Journal of biomolecular screening, 19, 1090-1098, 24632659
The shikimate dehydrogenase family: functional diversity within a conserved structural and mechanistic framework.
Peek J, Christendat D
2015, Archives of biochemistry and biophysics, 566, 85-99, 25524738
Isolation and molecular characterization of the shikimate dehydrogenase domain from the Toxoplasma gondii AROM complex
Peek J, Castiglione G, Shi T, Christendat D
2014, Molecular and biochemical parasitology, 194, 16-9, 24731949
2013
Crystal structure and biochemical analyses reveal that the Arabidopsis triphosphate tunnel metalloenzyme AtTTM3 is a tripolyphosphatase involved in root development
Moeder W, Garcia-Petit C, Ung H, Fucile G, Samuel MA, Christendat D, Yoshioka K
2013, The Plant journal : for cell and molecular biology, 76, 615-26, 24004165
Sequencing and annotation of the Ophiostoma ulmi genome
Khoshraftar S, Hung S, Khan S, Gong Y, Tyagi V, Parkinson J, Sain M, Moses AM, Christendat D
2013, BMC genomics, 14, 162, 23496816
2012
Insights into the function of RifI2: structural and biochemical investigation of a new shikimate dehydrogenase family protein
Peek J, Garcia C, Lee J, Christendat D
2013, Biochimica et biophysica acta, 1834, 516-23, 23142411
2011
Structural and mechanistic analysis of a novel class of shikimate dehydrogenases: evidence for a conserved catalytic mechanism in the shikimate dehydrogenase family
Peek J, Lee J, Hu S, Senisterra G, Christendat D
2011, Biochemistry, 50, 8616-27, 21846128
Structural and biochemical investigation of two Arabidopsis shikimate kinases: the heat-inducible isoform is thermostable
Fucile G, Garcia C, Carlsson J, Sunnerhagen M, Christendat D
2011, Protein science : a publication of the Protein Society, 20, 1125-36, 21520319
ePlant and the 3D data display initiative: integrative systems biology on the world wide web
Fucile G, Di Biase D, Nahal H, La G, Khodabandeh S, Chen Y, Easley K, Christendat D, Kelley L, Provart NJ
2011, PloS one, 6, e15237, 21249219
2009
The crystal structure of Aquifex aeolicus prephenate dehydrogenase reveals the mode of tyrosine inhibition
Sun W, Shahinas D, Bonvin J, Hou W, Kimber MS, Turnbull J, Christendat D
2009, The Journal of biological chemistry, 284, 13223-32, 19279014
2008
Evolutionary diversification of plant shikimate kinase gene duplicates
Fucile G, Falconer S, Christendat D
2008, PLoS genetics, 4, e1000292, 19057671
Identification of a functionally essential amino acid for Arabidopsis cyclic nucleotide gated ion channels using the chimeric AtCNGC11/12 gene
Baxter J, Moeder W, Urquhart W, Shahinas D, Chin K, Christendat D, Kang HG, Angelova M, Kato N, Yoshioka K
2008, The Plant journal : for cell and molecular biology, 56, 457-69, 18643993
A phylogenomic analysis of the shikimate dehydrogenases reveals broadscale functional diversification and identifies one functionally distinct subclass
Singh S, Stavrinides J, Christendat D, Guttman DS
2008, Molecular biology and evolution, 25, 2221-32, 18669580
Structural insight on the mechanism of regulation of the MarR family of proteins: high-resolution crystal structure of a transcriptional repressor from Methanobacterium thermoautotrophicum
Saridakis V, Shahinas D, Xu X, Christendat D
2008, Journal of molecular biology, 377, 655-67, 18272181
2006
Structure of Arabidopsis dehydroquinate dehydratase-shikimate dehydrogenase and implications for metabolic channeling in the shikimate pathway
Singh SA, Christendat D
2006, Biochemistry, 45, 7787-96, 16784230
Biochemical characterization of prephenate dehydrogenase from the hyperthermophilic bacterium Aquifex aeolicus
Bonvin J, Aponte RA, Marcantonio M, Singh S, Christendat D, Turnbull JL
2006, Protein science : a publication of the Protein Society, 15, 1417-32, 16731976
Crystal structure of prephenate dehydrogenase from Aquifex aeolicus. Insights into the catalytic mechanism
Sun W, Singh S, Zhang R, Turnbull JL, Christendat D
2006, The Journal of biological chemistry, 281, 12919-28, 16513644
2005
The crystal structure of a novel SAM-dependent methyltransferase PH1915 from Pyrococcus horikoshii
Sun W, Xu X, Pavlova M, Edwards AM, Joachimiak A, Savchenko A, Christendat D
2005, Protein science : a publication of the Protein Society, 14, 3121-8, 16260766
Crystal structure of a novel shikimate dehydrogenase from Haemophilus influenzae
Singh S, Korolev S, Koroleva O, Zarembinski T, Collart F, Joachimiak A, Christendat D
2005, The Journal of biological chemistry, 280, 17101-8, 15735308
2004
The structural basis for methylmalonic aciduria. The crystal structure of archaeal ATP:cobalamin adenosyltransferase
Saridakis V, Yakunin A, Xu X, Anandakumar P, Pennycooke M, Gu J, Cheung F, Lew JM, Sanishvili R, Joachimiak A, Arrowsmith CH, Christendat D, Edwards AM
2004, The Journal of biological chemistry, 279, 23646-53, 15044458
Crystal structure of the hypothetical protein TA1238 from Thermoplasma acidophilum: a new type of helical super-bundle
Sanishvili R, Pennycooke M, Gu J, Xu X, Joachimiak A, Edwards AM, Christendat D
2004, Journal of structural and functional genomics, 5, 231-40, 15704011
Crystal structure of chorismate synthase from Aquifex aeolicus reveals a novel beta alpha beta sandwich topology
Viola CM, Saridakis V, Christendat D
2004, Proteins, 54, 166-9, 14705034
2003
Structure- and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum
Kim Y, Yakunin AF, Kuznetsova E, Xu X, Pennycooke M, Gu J, Cheung F, Proudfoot M, Arrowsmith CH, Joachimiak A, Edwards AM, Christendat D
2004, The Journal of biological chemistry, 279, 517-26, 14555659
Crystal structures of MTH1187 and its yeast ortholog YBL001c
Tao X, Khayat R, Christendat D, Savchenko A, Xu X, Goldsmith-Fischman S, Honig B, Edwards A, Arrowsmith CH, Tong L
2003, Proteins, 52, 478-80, 12866058
Data mining crystallization databases: knowledge-based approaches to optimize protein crystal screens
Kimber MS, Vallee F, Houston S, Necakov A, Skarina T, Evdokimova E, Beasley S, Christendat D, Savchenko A, Arrowsmith CH, Vedadi M, Gerstein M, Edwards AM
2003, Proteins, 51, 562-8, 12784215
Structural proteomics: toward high-throughput structural biology as a tool in functional genomics
Yee A, Pardee K, Christendat D, Savchenko A, Edwards AM, Arrowsmith CH
2003, Accounts of chemical research, 36, 183-9, 12641475
Deep trefoil knot implicated in RNA binding found in an archaebacterial protein
Zarembinski TI, Kim Y, Peterson K, Christendat D, Dharamsi A, Arrowsmith CH, Edwards AM, Joachimiak A
2003, Proteins, 50, 177-83, 12486711
2002
The crystal structure of MT0146/CbiT suggests that the putative precorrin-8w decarboxylase is a methyltransferase
Keller JP, Smith PM, Benach J, Christendat D, deTitta GT, Hunt JF
2002, Structure (London, England : 1993), 10, 1475-87, 12429089
Crystal structure of MTH169, a crucial component of phosphoribosylformylglycinamidine synthetase
Batra R, Christendat D, Edwards A, Arrowsmith C, Tong L
2002, Proteins, 49, 285-8, 12211007
Crystal structure of Methanobacterium thermoautotrophicum conserved protein MTH1020 reveals an NTN-hydrolase fold
Saridakis V, Christendat D, Thygesen A, Arrowsmith CH, Edwards AM, Pai EF
2002, Proteins, 48, 141-3, 12012346