Qian Lin

Assistant Professor


Campus

St. George (downtown)

CSB Appointment

Full

Research Areas

Bioinformatics / Computational Biology, Neurobiology

Education

Ph.D National University of Singapore (NUS) 2016
BSc University of Science and Technology of China (USTC) 2011

Graduate Programs

Cell and Systems Biology

Research Description

Our lab wants to understand how the brain produces flexible and adaptive behaviors – the neural mechanisms underlying cognition and behaviors at the systems level. To do so, we combine whole-brain neural imaging and computational tools on behaving animal models. To gain access to the whole brain at the single-cell level, we work with the zebrafish model and cutting-edge microscopies. Our approach is to develop data-driven computational models that can explain and predict behaviors from neural activity.

The cerebellum, with a highly conserved layered architecture, has recently emerged as a critical region for cognitive functions. Our lab focuses on the “cognitive cerebellum” by studying cerebellar microcircuits and interactions with the brain-wide neurodynamics in three decision-making contexts – learning, social cognition, and spatial navigation. We employ state-of-art optical neurotechnology, virtual realities, calcium imaging in awake zebrafish, computation tools from machine learning and dynamical systems, and an array of optogenetic tools.


Contact Information

Office: 603A
Lab: 603/604
Email

Mailing Address

25 Harbord Street,
Toronto, Ontario,
M5S 3G5

Visit lab’s website


Recent News

A year of deep research leads to a culminating event for fourth year students

Fourth year students in CSB can join our research laboratories to conduct projects in their favourite topic as part of CSB497, 498 or 499 courses.…

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Congratulations to CSB’s talented 2025-2026 graduate award recipients!

Graduate students in the Department of Cell & Systems Biology cover a broad range of fields, including plant science, neuroscience, cell biology,…

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Undergraduate researchers reveal exciting project results at year-end poster session to earn F Michael Barrett Award

On Friday, April 5th, 2024 students from the CSB497, 498 and 499 independent research programs presented their project results in a poster session…

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Publications

2025

Altered locomotion and anxiety after exposure to SiO nanoparticles in larval zebrafish.

Shen PY, Wu J, Pu G, Huang K, Lin Q
2025, Scientific reports, 15, 18229, 40414979

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2020

Cerebellar Neurodynamics Predict Decision Timing and Outcome on the Single-Trial Level

Lin Q, Manley J, Helmreich M, Schlumm F, Li JM, Robson DN, Engert F, Schier A, Nöbauer T, Vaziri A
2020, Cell, 10.1016/j.cell.2019.12.018

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2017

Characterization of a thalamic nucleus mediating habenula responses to changes in ambient illumination

Cheng R, Krishnan S, Lin Q, Kibat C, Jesuthasan S
2017, BMC Biology, 10.1186/s12915-017-0431-1

Masking of a circadian behavior in larval zebrafish involves the thalamo-habenula pathway

Lin Q, Jesuthasan S
2017, Scientific Reports, 10.1038/s41598-017-04205-7

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