CSB's Tamar Mamourian recognized for 35 years of outstanding service to U of T
Everyone in Cell & Systems Biology is familiar with the smiling face and focused tone of our Chief Administrative Officer Tamar Mamourian. She is always available to facilitate solutions to a problem, suggest more sensible alternatives, or sometimes just listen.
Tamar combines her keen perceptions with a deep understanding of the workings of the University that comes from 35 years of service. That service has been recognized by the University through the 35 Long Service Award. This Award recognizes the role she has played in the success of our institution, her commitment to excellence, and cites the benefits her efforts have yielded for her colleagues and our students.
We give our warmest congratulations to our cherished colleague, Tamar Mamourian.
In Memoriam: Professor Betty Ida Roots
The University of Toronto Community lost an eminent scholar on October 24th with the passing of Professor Betty Ida Roots, PhD, DSc, FRSC. She served the University in a number of roles; as Professor at U of T from 1969, Assistant Chair of Zoology beginning in 1972, Associate Dean of Science at UTM (then Erindale College) from 1976 and Chair of the Department of Zoology (now CSB and EEB) from 1984-1990. Roots planned, established, and directed the Electron Microscope Facility at UTM. One of her many lasting legacies is the collaborative Ph.D. program in Neuroscience at the University of Toronto, which she initiated and developed. Her friend Professor Ellie Larsen describes her as “not only a successful scientist but also a very fine leader”.
Breaking barriers: Quebec platelet disorder
A decade after the discovery that Quebec Platelet Disorder is caused by a tandem duplication, the Mitchell laboratory and collaborators demonstrate that this causes the additional copy of the duplicated PLAU gene to be on the opposite side of a CTCF genomic boundary. As a consequence, the extra copy is not insulated from the effects of a transcriptional enhancer of the adjacent VCL gene, resulting in a high level of transcription. This phenomenon is known as “enhancer hijacking”.
Read More Here
This research has been published as "Enhancer-gene rewiring in the pathogenesis of Quebec platelet disorder"
Building excellence in research and teaching: CSB’s new Chair Nicholas Provart
Professor Nick Provart likes building things; he even used his carpentry skills to expand his children’s treehouse while working from home (without losing any fingers). As the new Chair of the Department of Cell & Systems Biology (CSB), he now has the opportunity to build up the academic excellence of the Department.
Building on the strength infused into CSB by the previous Chair, Vincent Tropepe, Provart will guide a department that is world class in life sciences, research, and teaching initiatives. When considering his new role, he also received valuable advice from previous Chairs Daphne Goring and John Coleman.
Provart started at University of Toronto in 2002 as an early leader in data science at the Department of Botany (now part of CSB). His laboratory established the Botany Affymetrix Resource (BAR), developing user-friendly techniques and tools for visualizing genome-wide, tissue-specific gene expression that have evolved along with the latest advances in genomics technology.
CSB is building on this Departmental expertise in data science by developing a Professional Masters in Biological Data Science. Provart anticipates this will provide benefits to graduates in finding jobs in labs, agencies or startups, and will provide productive cross-fertilization with graduate students working at the lab bench.
Provart feels “fortunate to be part of a pretty diverse and inclusive Department, University, and City”. Along with ensuring diversity of hires, he will encourage presenting a wide range of voices to be heard as speakers inside and outside the Department.
Provart has been teaching online since 2014. When in-person lectures moved online due to COVID-19, he adapted quickly to delivering his Bioinformatic Methods course entirely online. He shares his extensive experience in online instruction as a Fellow in the Faculty of Arts & Science’s Online Learning Academy.
“I hope I will be able to help CSB and other faculty across Arts & Science get up to speed in terms of pivoting to online learning this fall” Provart says. Once in-person classes return, he will strengthen CSB’s experiential learning opportunities in upper level courses and through the Bioinformatics and Computational Biology program at CSB.
Provart believes the CSB has a “hugely important” role in promoting science outside the University, through supporting organizations like Let’s Talk Science and iGEM Toronto. “From my perspective, it was amazing to see the interest of the public at last year’s Science Rendezvous”, an outdoor science festival where CSB presented its science alongside other U of T Departments. “These community building and outreach efforts are an important aspect to us as scientists.”
Congratulations to CSB’s new Chair, Nicholas Provart!
CSB researcher awarded Provost’s Postdoctoral Fellowship
We are pleased to announce that Dr Ian Tobias has won a Provost’s Postdoctoral Fellowship to pursue research at Professor Jennifer Mitchell’s laboratory in Cell & Systems Biology. He will study how growth of stem cells differs between species.
Dr Tobias will examine regions of DNA called enhancers that can turn genes off and on without changing the protein they control. The evolution of new traits between species is known to mainly occur by alterations in regions of DNA (including enhancers) that are found outside of genes. He will determine whether activators that bind to enhancers have changed as animals evolved into different species, and how this affects the development of stem cells into the organs of the body. This follows on from his PhD work, where Dr Tobias demonstrated that the signals in the cellular environment that support stem cells are different in dogs compared with mice and humans.
This research has important implications for using stem cells to treat humans using regenerative medicine; with many stem cell studies conducted in worms, fish or mice, it is important to understand differences between species to unlock potential stem cell therapies for humans.
The goal of the Provost Postdoctoral Fellowship is to increase opportunities for hiring postdoctoral fellows from underrepresented groups, specifically Indigenous and/or Black researchers, and strengthen the research environment at the University with diverse perspectives. Dr Tobias is a member of the Chippewas of Nawash First Nation.
Prof Vince Tropepe's lab using zebrafish as a vertebrate model for Usher Syndrome-linked blindness
CSB Chair Vincent Tropepe has received funding from Fighting Blindness Canada to conduct research using zebrafish to study Usher syndrome, a genetic condition that results in hearing and vision loss. Loss of vision in Usher syndrome is the result of retinal degeneration, but the mechanism through which degeneration happens in unknown.
Clues to the way retinal degeneration happens in Usher syndrome can be found in the zebrafish model organism. The gene that is altered in 20% of humans with Usher syndrome is also present in zebrafish, and mutations in zebrafish that mimic the Usher-linked changes in this 'protocadherin' gene can result in reduced hearing and vision.
When the zebrafish protocadherin protein Pcdh15b is mutated in the lab, the integrity of the outer segment of retinal cells, the region that captures light, is compromised. Mutants have a progressive loss of photoreceptor outer segments, which can be attenuated by darkness or exacerbated by light exposure.
The Tropepe lab will characterize the subcellular defects that underscore photoreceptor degeneration, identify Pcdh15b-binding proteins to reveal novel Pcdh15-dependent mechanisms for photoreceptor maintenance, and catalogue the different forms of Pcdh15b to identify ones that will prevent retinal degeneration as a potential gene therapy.
We are grateful to Fighting Blindness Canada for their support; you can read more about their funded research and also donate to them here.
CSB neurobiologists identify switch that turns muscles on and off during sleep
CSB Professor John Peever, CSB PhD grad Zoltan Torontali and CSB RA Jimmy Fraigne have demonstrated a new link between arousal and muscle paralysis in mice using behavioral, electrophysiological, and chemogenetic strategies in a paper in Current Biology.
During REM sleep, muscle paralysis is induced by a region of the brain called the Sublaterodorsal Tegmental Nucleus (SLD). Involuntary muscle paralysis during wakefulness can occur in the natural phenomenon of cataplexy, whereas sleep is involuntarily induced in narcolepsy.
Prof Peever’s lab found that activation of SLD neurons in both narcoleptic and normal mice promotes cataplexy, whereas SLD silencing prevents cataplexy. This region of the brain therefore couples arousal state and motor activity during REM sleep and wakefulness.
This new understanding has the potential to treat muscular disorders in humans. In Parkinsons’s disease, the affected person’s muscles are in a continual state of rigour during wakefulness, but this rigour relaxes during REM sleep. Prof Peever dreams of helping Parkinson’s patients by applying this new understanding of the SLD to tune their muscle tension during wakefulness.
You can read more about this insight in a story from UofT News and in the Current Biology paper.
Neuroscientist Dr Jessica Pressey joins CSB in 2020 as Assistant Professor, Teaching Stream
We are fortunate to have recruited Jessica Pressey to CSB as an Assistant Professor, Teaching-Stream (3-year CLTA) as of Jan 1, 2020. Professor Pressey graduated with a PhD from Dean Woodin's lab in 2015 and completed postdoctoral research at INSERM's Institut du Fer à Moulin in Paris, France.
Her field of expertise is synaptic transmission, neuroplasticity, and brain development and as such she will be a valuable addition to CSB's Animal Physiology Major program and for CSB research project course students studying electrophysiology.
Congratulations, Professor Pressey!
Researchers delay onset of amyotrophic lateral sclerosis (ALS) in laboratory models
Learn more about recent research from the laboratories of Prof Junchul Kim and Dean Melanie Woodin, "Cortical interneuron-mediated inhibition delays the onset of amyotrophic lateral sclerosis", in this story from the Faculty of Arts & Science:
Researchers delay onset of amyotrophic lateral sclerosis (ALS) in laboratory models
Pan-genome effector analysis of Pseudomonas syringae reveals the ways wild plants evade infection
The Guttman and Desveaux labs in Cell & Systems Biology have published a comprehensive analysis of the huge variety of methods used by bacteria to evade the immune system of plants in the latest issue of Science magazine: "The pan-genome effector-triggered immunity landscape of a host-pathogen interaction."
Imagine you're growing a tomato plant and you see black spots on the leaves and fruit. This could be a bacterial infection. You notice that a weed that's growing beside it in your garden doesn't have the black spots even though it's touching the infected areas. This is due to resistance genes (R-genes) in wild plants that give it immunity to infection by the black spot bacteria.
Professors Desveaux and Guttman's goal was to survey all the different ways that one species of bacteria can try to evade the immune response in plants. Working with post-doc Dr Marcus Dillon and graduate students Bradley Laflamme, Alex Martel and Renan Almeida, they collected together over 500 different effectors used to infect plants from all variants of the bacterial species Pseudomonas syringae. By exposing the wild plant Arabidopsis thaliana to this comprehensive library, they identified all the R-genes that are stimulated by these effectors, including two new ones.
Although crop plants like tomatoes have resistance to many infections, they may have lost some R-genes through breeding programs that selected for traits desired by humans. Those R-genes may still be active in wild or heirloom varieties of the plant. To apply the discoveries made in their Science paper, the Guttman and Desveaux labs have received funding from the Weston Foundation Seeding Food Innovation program to identify and reintroduce missing R-genes into crop plants.
More details on these tools for combating crop diseases are shared in this UofT News story